I previously had 40/50 Amphibians used. Then I did a few modded battles and when I was sure I used the remaining 10 I came to look at the missions and it had been reset. Now it stands at 10/50. Anyone else facing the same issue? I have raised a support ticket to Ludia as well mentioning my situation
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Same thing happened to me
The same thing happens to me, I had 40/50 in amphibians and pterosaurs and today with the arrival of the missions of the new boss, I was restored to 0/50 
Turn in a ticket to Support, remember to include your Support Key
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Notified our team as well! If you haven’t already, please write in at support+forums@ludia.com with your support key.
Thanks!
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Well 
…
Reset as well, it reset them to a lower amount needed in total but since I think I only had ten left of each it’s a high likelihood I will not make it, or I will need to do a long PvP run tonight.
Happened to me also. But with the hatch 30 dinos one. And had my last 2 going to hatch right about now. Got reset to needing to hatch 20 more… 
Sent ticket to support.
27 battles needed to use all of the necessary creatures, minimum investment will be 135 DB if I do non-MOD PvP or 270 DB plus MODs to do MOD PvP. This would also means 80 plus MODs to be gathered… so about 1hour 45 minutes of play time if I do MOD and maybe 1 hour 15 minutes if I do non-MOD.
Decisions… need to be made.
I had completed all of mine before the update so mine were already gone
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Almost 100 mil coins gets you this for MODs when using the common spins:
Just over 40 MODs so going to be well over 200 mil if I go full MOD route.
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God I despise the distraction mod, makes the match unnecessarily longer than they already have to be. I try to avoid the spins with distraction mod in them lol